PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0037s0127.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 421aa    MW: 45331.2 Da    PI: 7.873
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0037s0127.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.2e-0991115226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           +++ C +++ t  C++G +C+F H+
  Sphfalx0037s0127.1.p  91 GEKMCAYYMTTRNCSFGTSCRFDHP 115
                           6789********************9 PP

2zf-CCCH37.53.9e-12146171227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++  C ++++tG+CkyG +C+F H++
  Sphfalx0037s0127.1.p 146 GETVCAYYMKTGECKYGIKCRFDHPK 171
                           6789********************96 PP

3zf-CCCH34.63.1e-11208230527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                            C ++ +tG CkyG++C+F+H++
  Sphfalx0037s0127.1.p 208 DCVYYVKTGSCKYGASCRFNHPE 230
                           69*******************96 PP

4zf-CCCH38.51.9e-12283309127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++ C+ff++tG+C++G++C+F+H+p
  Sphfalx0037s0127.1.p 283 PGEADCSFFLKTGECSFGPTCRFNHPP 309
                           57899********************97 PP

5zf-CCCH35.41.9e-11342364426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            +C ++++tG Ck+G+ CkF H+
  Sphfalx0037s0127.1.p 342 TPCAYYMKTGACKFGPVCKFDHP 364
                           69********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.1989116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.02889117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-590115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-493114IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-695115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605144172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6144173IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6144171IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9146171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-6149171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493203231IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6203230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6207232IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8208230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-6209231IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6282309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159282310IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-10284309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5286311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4288308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07338366IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-6338365IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8341364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5341365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4343363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAGSNHQLIY AMAPQYAAPL QYQYYTAEQP PLALPYSSLY SPPPPLPYDH QGLVGRIKRP  60
AEDAWGAPDY TKRVRPDSGG VVVGPFPQRP GEKMCAYYMT TRNCSFGTSC RFDHPTWVPV  120
GGIANWKEVT ASVTPTDPAT LPQRPGETVC AYYMKTGECK YGIKCRFDHP KERTESGSHN  180
DQTQQAVTPV KAAAFNSKGL PIRPSEIDCV YYVKTGSCKY GASCRFNHPE ANLAGSRAGV  240
PLFPMGASQS QPPYTPAPIH YQTGQECAYP SGISVVGSYP QRPGEADCSF FLKTGECSFG  300
PTCRFNHPPN RVPSVVSRPS SIAAAASVKL TLAGLPRRES ETPCAYYMKT GACKFGPVCK  360
FDHPTPGEVA AKALEAARVE VPVMLDTNLS ETSTIGLNEP SVASSGNDVV VETFSSAQEV  420
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001766711.11e-111predicted protein, partial
TrEMBLA9SK181e-111A9SK18_PHYPA; Predicted protein (Fragment)
STRINGBra034744.1-P6e-86(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.14e-81floral homeotic protein (HUA1)